Here regroup the code for the paper “Spatially resolved 3D metabolomic profiling in tissues“.
This repository shows the framework for using unsupervised machine learning algorithms for 3D Spatially-resolved Metabolomics and network analysis.
You can download the detailed code: Code
The webpage comports jupyter notebook code for generating:
- Transform txt file from TOF-SIMS to numpy array
- 3D resolved correlation heatmap
- Isotope information extraction
- 3D K-means clustering